Building multiple sequence alignments with a flavor of HSSP alignments.

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Author(s): HIGA, R. H.; CRUZ, S. A. B. da; KUSER, P. R.; YAMAGISHI, M. E. B.; FILETO, R.; OLIVEIRA, S. R. de M.; MAZONI, I.; SANTOS, E. H. dos; MANCINI, A. L.; NESHICH, G.

Summary: The present study describes the processing used for building SH2QS as well as a comparison of the degree of residue conservation reported by SH2QS and HSSP. The comparison of the profiles from two alignments is also presented.

Publication year: 2006

Types of publication: Journal article

Unit: Embrapa Digital Agriculture

Keywords: Bioinformatics, Bioinformática, Estrutura secundária de proteínas, Multiple sequence alignment, Protein secondary structure, Protein structure, Relative entropy, Residue conservation, Sting

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