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Expected Genotype Quality and Diploidized Marker Data from Genotyping-by-Sequencing of Urochloa spp. Tetraploids. Author(s): MATIAS, F. I.; MEIRELES, K. G. X.; NAGAMATSU, S. T.; BARRIOS, S. C. L.; VALE, C. B. do; CARAZZOLLE, M. F.; FRITSCHE-NETO, R.; ENDELMAN, J. B. Although genotyping-by-sequencing (GBS) is a well-established marker technology in diploids, the development of best practices for tetraploid species is a topic of current research. We determined the... ... Repository: BDPA Publication year: 2019
Genome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using whole-genome re-sequencing data. Author(s): PERIPOLLI, E.; REIMER, C.; HA, NGOC-THUY; GEIBEL. J.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SIMIANER, H.; SILVA, M. V. G. B. Background: The cattle introduced by European conquerors during the Brazilian colonization period were exposed to a process of natural selection in different types of biomes throughout the country, le... ... Repository: BDPA Publication year: 2020
Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data. Author(s): PERIPOLLI, E.; STAFUZZA, N. B.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SILVA, M. V. G. B. Further characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective p... ... Repository: BDPA Publication year: 2023
A high-throughput data mining of single nucleotide polymorphisms in Coffea species expressed sequence tags suggests differential homeologous gene expression in the allotetrapoloid Coffea arabica. Author(s): VIDAL, R. O.; MONDEGO, J. M. C.; POT, D.; AMBRÓSIO, A. B.; ANDRADE, A. C.; PEREIRA, L. F. P.; COLOMBO, C. A.; VIEIRA, L. G. E.; CARAZZOLLE, M. F.; PEREIRA, G. A. G. Polyploidization constitutes a common mode of evolution in flowering plants. This event provides the raw material for the divergence of function in homeologous genes, leading to phenotypic novelty tha... ... Repository: BDPA Publication year: 2010
SisGen: a corba-based data management program for DNA sequencing projects. Author(s): PAPPAS JUNIOR, G. J.; MIRANDA, R. P.; MARTINS, N. F.; TOGAWA, R. C.; COSTA, M. M. C. Repository: BDPA Publication year: 2008
Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. Author(s): ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Repository: BDPA Publication year: 2019
Specific Quality Control is essential for Next-Generation Sequencing data usage: case studies in Illumina data from algae, yeasts and plants. Author(s): PORTO, B. N.; STEINDORFF, A. S.; BRITO, L. S. de; FORMIGHIERI, E. F. Repository: BDPA Publication year: 2016
Candidate genes for tick resistance in cattle: a systematic review combining post-GWAS analyses with sequencing data. Author(s): SANTOS, C. G. dos; SOUSA, M. F.; VIEIRA, J. I. G.; MORAIS, L. R. de; FERNANDES, A. A. S.; LITTIERE, T. de O.; OTTO, P. I.; MACHADO, M. A.; SILVA, M. V. G. B.; BONAFÉ, C. M.; MAGALHÃES, A. F. B.; VERARDO, L. L. Rhipicephalus microplus causes huge losses in cattle. Host genetic background greatly affects the immune efficiency in resistance or susceptibility to tick infestation, which is one of the many factor... ... Repository: BDPA Publication year: 2022
Genomic regions associated with drought tolerance in upland rice landraces: linking experimental data from QTL mapping and EST sequencing. Author(s): PESSOA-FILHO, M.; LINS, T. C. L.; RABELLO, A. R.; MEHTA, A.; RANGEL, P. H. N.; FERREIRA, M. E. Repository: BDPA Publication year: 2011
In silico detection of a defective genomic RNA of Grapevine leafroll-associated virus 4 strain 5 in High-Throughput Sequencing data. Author(s): SILVA, J. M. F.; BLAWID, R.; NAGATA, T.; FAJARDO, T. V. M. Grapevine leafroll disease (GLRD) is one of the most economically important viral diseases affecting grapevines (Maliogka et aI., 2015). Repository: BDPA Publication year: 2018

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