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Machado: open source genomics data integration framework. Author(s): MUDADU, M. de A.; ZERLOTINI NETO, A. Abstract. Background: Genome projects and multiomics experiments generate huge volumes of data that must be stored, mined, and transformed into useful knowledge. All this information is supposed to be... ... Repository: BDPA Publication year: 2020
Genetic origin of Brazilian local adapted sheep (Ovis aries) breeds by complete mitochondrial genome data analysis. Author(s): LOBO, F. P.; YAMAGISHI, M. E. B.; CAETANO, A. R.; MCMANUS, C. M.; CARNEIRO, P. L.; FACO, O.; SOUZA, C. J. H.; PAIVA, S. R. The origin and domestication footprints present in contemporary domestic sheep breeds are of fundamental importance to provide insights regarding the identification of major genetic pools and breeds o... ... Repository: BDPA Publication year: 2013
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. Author(s): HONGO, J. A.; CASTRO, G. M. de; CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P. Abstract: Background: Detection of genes evolving under positive Darwinian evolution in genome-scale data is nowadays a prevailing strategy in comparative genomics studies to identify genes potentiall... ... Repository: BDPA Publication year: 2015
Evaluation of Bayesian methods of genomic association via chromosomic regions using simulated data. Author(s): LIMA, L. P.; AZEVEDO, C. F.; RESENDE, M. D. V. de; NASCIMENTO, M.; SILVA, F. F. e The development of efficient methods for genome-wide association studies (GWAS) between quantitative trait loci (QTL) and genetic values is extremely important to animal and plant breeding programs. B... ... Repository: BDPA Publication year: 2022
An approach to genomic analysis of longitudinal data using random regression. Author(s): SANTOS, D. J.; BOISON, S. A.; UTSUNOMIYA, Y. T.; PEIXOTO, M. G. C. D.; TONHATI, H.; SÖLKNER, J.; SILVA, M. V. G. B. Repository: BDPA Publication year: 2014
Inbreeding effect and genotyping strategies for genomic selection in simulated data. Author(s): NASCIMENTO, G. B.; VENTURA, R. V.; LEDUR, M. C.; SAVEGNAGO, R. P.; SENO, L. de O.; MUNARI, D. P. Repository: BDPA Publication year: 2013
Machado: a genomic data integration framework for Chado developed with Django. Author(s): MUDADU, M. de A.; ZERLOTINI NETO, A. Repository: BDPA Publication year: 2019
In silico detection of a defective genomic RNA of Grapevine leafroll-associated virus 4 strain 5 in High-Throughput Sequencing data. Author(s): SILVA, J. M. F.; BLAWID, R.; NAGATA, T.; FAJARDO, T. V. M. Grapevine leafroll disease (GLRD) is one of the most economically important viral diseases affecting grapevines (Maliogka et aI., 2015). Repository: BDPA Publication year: 2018
Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. Author(s): ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Repository: BDPA Publication year: 2019
Genome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using whole-genome re-sequencing data. Author(s): PERIPOLLI, E.; REIMER, C.; HA, NGOC-THUY; GEIBEL. J.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SIMIANER, H.; SILVA, M. V. G. B. Background: The cattle introduced by European conquerors during the Brazilian colonization period were exposed to a process of natural selection in different types of biomes throughout the country, le... ... Repository: BDPA Publication year: 2020

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