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Machado: open source genomics data integration framework. Author(s): MUDADU, M. de A.; ZERLOTINI NETO, A. Abstract. Background: Genome projects and multiomics experiments generate huge volumes of data that must be stored, mined, and transformed into useful knowledge. All this information is supposed to be... ... Repository: BDPA Publication year: 2020
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. Author(s): HONGO, J. A.; CASTRO, G. M. de; CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P. Abstract: Background: Detection of genes evolving under positive Darwinian evolution in genome-scale data is nowadays a prevailing strategy in comparative genomics studies to identify genes potentiall... ... Repository: BDPA Publication year: 2015
Evaluation of Bayesian methods of genomic association via chromosomic regions using simulated data. Author(s): LIMA, L. P.; AZEVEDO, C. F.; RESENDE, M. D. V. de; NASCIMENTO, M.; SILVA, F. F. e The development of efficient methods for genome-wide association studies (GWAS) between quantitative trait loci (QTL) and genetic values is extremely important to animal and plant breeding programs. B... ... Repository: BDPA Publication year: 2022
An approach to genomic analysis of longitudinal data using random regression. Author(s): SANTOS, D. J.; BOISON, S. A.; UTSUNOMIYA, Y. T.; PEIXOTO, M. G. C. D.; TONHATI, H.; SÖLKNER, J.; SILVA, M. V. G. B. Repository: BDPA Publication year: 2014
Inbreeding effect and genotyping strategies for genomic selection in simulated data. Author(s): NASCIMENTO, G. B.; VENTURA, R. V.; LEDUR, M. C.; SAVEGNAGO, R. P.; SENO, L. de O.; MUNARI, D. P. Repository: BDPA Publication year: 2013
Machado: a genomic data integration framework for Chado developed with Django. Author(s): MUDADU, M. de A.; ZERLOTINI NETO, A. Repository: BDPA Publication year: 2019
Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. Author(s): ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Repository: BDPA Publication year: 2019
Genome-wide detection of signatures of selection in indicine and Brazilian locally adapted taurine cattle breeds using whole-genome re-sequencing data. Author(s): PERIPOLLI, E.; REIMER, C.; HA, NGOC-THUY; GEIBEL. J.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SIMIANER, H.; SILVA, M. V. G. B. Background: The cattle introduced by European conquerors during the Brazilian colonization period were exposed to a process of natural selection in different types of biomes throughout the country, le... ... Repository: BDPA Publication year: 2020
Assessment of copy number variants in three Brazilian locally adapted cattle breeds using whole-genome re-sequencing data. Author(s): PERIPOLLI, E.; STAFUZZA, N. B.; MACHADO, M. A.; PANETTO, J. C. do C.; EGITO, A. A. do; BALDI, F.; SILVA, M. V. G. B. Further characterization of genetic structural variations should strongly focus on small and endangered local breeds given their role in unraveling genes and structural variants underlying selective p... ... Repository: BDPA Publication year: 2023
Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations. Author(s): MULLER, B. S. F.; ALMEIDA FILHO, J. E. de; LIMA, B. M.; GARCIA, C. C.; MISSIAGGIA, A.; AGUIAR, A. M.; TAKAHASHI, E.; KIRST, M.; GEZAN, S. A.; SILVA JUNIOR, O. B. da; NEVES, L. G.; GRATTAPAGLIA, D. Repository: BDPA Publication year: 2019

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