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Introduction to genome editing in plants. Author(s): LOPES FILHO, J. H.; SILVA, V. C. H. da; SANTOS, J. C. dos; DANTE, R. A.; GERHARDT, I. R.; YASSITEPE, J. E. de C. T.; FERNANDES, F. R. Present and future challenges of modern agriculture. Gene editing tools for precision crop breeding. Genome editing methodologies. Origin of the CRISPR/Cas technology. Overview of mechanisms and enzym... ... Repository: BDPA Publication year: 2021
Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis. Author(s): SANTANA, M. F.; SILVA, J. C. F.; BATISTA, A. D.; RIBEIRO, L. E.; SILVA, G. F. da; ARAÚJO, E. F. de; QUEIROZ, M. V. de Mycosphaerella fijiensis is a ascomycete that causes Black Sigatoka in bananas. Recently, the M. fijiensis genome was sequenced. Repetitive sequences are ubiquitous components of fungal genomes. In mo... ... Repository: BDPA Publication year: 2012
Draft genome sequence of the D-xylose-fermenting yeast Spathaspora arborariae UFMG-HM19.1AT. Author(s): LOBO, F. P.; GONÇALVES, D. L.; ALVES JÚNIOR, S. L.; GERBER, A. L.; VASCONCELOS, A. T. R. de; BASSO, L. C.; FRANCO, G. R.; SOARES, M. A.; CADETE, R. M.; ROSA, C. A.; STAMBUK, B. U. The draft genome sequence of the yeast Spathaspora arborariae UFMG-HM19.1AT (CBS 11463 = NRRL Y-48658) is presented here. The sequenced genome size is 12.7 Mb, consisting of 41 scaffolds containing a... ... Repository: BDPA Publication year: 2014
Genomic prediction in contrast to a genome-wide association study in explaining heritable variation of complex growth traits in breeding populations of Eucalyptus. Author(s): MÜLLER, B. S. F.; NEVES, L. G.; ALMEIDA FILHO, J. E. de; RESENDE JUNIOR, M. F. R.; MUÑOZ, P. R.; SANTOS, P. E. T. dos; PALUDZYSZYN FILHO, E.; KIRST, M.; GRATTAPAGLIA, D. Background: The advent of high-throughput genotyping technologies coupled to genomic prediction methods established a new paradigm to integrate genomics and breeding. We carried out whole-genome predi... ... Repository: BDPA Publication year: 2017
Genomic prediction in family bulks using different traits and cross-validations in pine. Author(s): RIOS, E. F.; ANDRADE, M. H. M. L.; RESENDE JR, M. F. R.; KIRST, M.; RESENDE, M. D. V. de; ALMEIDA FILHO, J. O. E. de; GEZAN, S. A.; MUNOZ, P. Genomic prediction integrates statistical, genomic, and computational tools to improve the estimation of breeding values and increase genetic gain. Due to the broad diversity in mating systems, breedi... ... Repository: BDPA Publication year: 2021
Sequencing and de novo genome assembly of a nelore (Bos indicus) bull. Author(s): CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P.; SILVA, F. R. da; GIACHETTO, P. F.; KUSER-FALCÃO, P. R.; SILVA, L. O. C. da; EGITO, A. A. do; SIQUEIRA, F.; SILVA, N. M. A. da; PAIVA, S. R.; YAMAGISHI, M. E. B.; CAETANO, A. R. Bos indicus cattle breeds have been extensively used for dairy and beef production in tropical climates and present several natural adaptations to biotic and abiotic stresses found in these regions of... ... Repository: BDPA Publication year: 2013
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. Author(s): HONGO, J. A.; CASTRO, G. M. de; CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P. Abstract: Background: Detection of genes evolving under positive Darwinian evolution in genome-scale data is nowadays a prevailing strategy in comparative genomics studies to identify genes potentiall... ... Repository: BDPA Publication year: 2015
Genome-wide detection of CNVs and their association with performance traits in broilers. Author(s): FERNANDES, A. C.; SILVA, V. H. da; GOES, C. P.; MOREIRA, G. C. M.; GODOY, T. F.; IBELLI, A. M. G.; PEIXOTO, J. de O.; CANTAO, M. E.; LEDUR, M. C.; REZENDE, F. M. de; COUTINHO, L. L. Abstract Background: Copy number variations (CNVs) are a major type of structural genomic variants that underlie genetic architecture and phenotypic variation of complex traits, not only in humans, bu... ... Repository: BDPA Publication year: 2021
Accuracy of genomic predictions in Bos indicus (Nellore) cattle. Author(s): NEVES, H. H.; CARVALHEIRO, R.; O'BRIEN, A. M.; UTSUNOMIYA, Y. T.; CARMO, A. S. do; SCHENKEL, F. S.; SÖLKNER, J.; MCEWAN, J. C.; VAN TASSELL, C. P.; COLE, J. B.; SILVA, M. V. G. B.; QUEIROZ, S. A.; SONSTEGARD, T. S.; GARCIA, J. F. Background- Nellore cattle play an important role in beef production in tropical systems and there is great interest in determining if genomic selection can contribute to accelerate genetic improvemen... ... Repository: BDPA Publication year: 2014
Is a genome a codeword of an error-correcting code? Author(s): FARIA, L. C. B.; ROCHA, A. S. L.; KLEINSCHMIDT, J. H.; SILVA-FILHO, M. C.; BIM, E.; HERAI, R. H.; YAMAGISHI, M. E. B.; PALAZZO JÚNIOR, R. Since a genome is a discrete sequence, the elements of which belong to a set of four letters, the question as to whether or not there is an error-correcting code underlying DNA sequences is unavoidabl... ... Repository: BDPA Publication year: 2012

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