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High-throughput targeted genotyping using next-generation sequencing applied in Coffea canephora breeding. Author(s): ALKIMIM, E. R.; CAIXETA, E. T.; SOUSA, T. V.; SILVA, F. L. da; SAKYAMA, N. S.; ZAMBOLIM, L. The use of molecular markers to detect polymorphism at DNA level is one of the most significant developments in molecular biology techniques. With the development of new next-generation sequencing tec... ... Repository: BDPA Publication year: 2018
High-throughput and cost-effective chicken genotyping using next-generation sequencing. Author(s): PÉRTILLE, F.; BOSAGNA, C. G.; SILVA, V. H. da; BOSCHIERO, C.; NUNES, J. de R. da S.; LEDUR, M. C.; JENSEN, P.; COUTINHO, L. L. Chicken genotyping is becoming common practice in conventional animal breeding improvement. Despite the power of high-throughput methods for genotyping, their high cost limits large scale use in anima... ... Repository: BDPA Publication year: 2016
Copy number variation in dairy cattle using next-generation sequencing. Author(s): CHUD, T. C. S.; BICKHART, D. M.; ZERLOTINI NETO, A.; COLE, J. B.; SILVA, M. V. G. B.; MUNARI, D. P. Gene copy number variants (CNV) have been shown to be associated with several production traits in dairy cattle; however, the detection and validation of CNVs in crossbred cattle is currently lacking.... ... Repository: BDPA Publication year: 2018
Isolation and characterization of 23 microsatellite loci in the stingless bee Melipona subnitida using next-generation sequencing. Author(s): SOUZA, I. G. B.; PATERSON, I.; McBRIDE, M. C.; SOUZA, B. A.; PEREIRA, F. M.; LOPES, M. T. R.; BENTZEN, P.; DINIZ, F. M. We described the isolation and characterization of 23 microsatellite loci from the stingless bee (Melipona subnitida). Out of 52 microsatellite primer pairs screened, 17 loci displayed polymorphism an... ... Repository: BDPA Publication year: 2015
High-throughput polymorphism detection and genotyping in polyploid Paspalum plicatulum using next-generation rad sequencing. Author(s): OLIVEIRA, F. A. de; VIGNA, B. B. Z.; FAVERO, A. P.; HOHENLOHE, P. A.; SOUZA, A. P. Repository: BDPA Publication year: 2015
Global assessment of imprinted gene expression in the bovine conceptus by next generation sequencing. Author(s): CHEN, Z.; HAGEN, D. E.; WANG, J.; ELSIK, C. G.; JI, T.; SIQUEIRA, L. G. B.; HANSEN, P. J.; RIVERA, R. M. Abstract Genomic imprinting is an epigenetic mechanism that leads to parental-allele-specific gene expression. Approximately 150 imprinted genes have been identified in humans and mice but less than 3... ... Repository: BDPA Publication year: 2016
Specific Quality Control is essential for Next-Generation Sequencing data usage: case studies in Illumina data from algae, yeasts and plants. Author(s): PORTO, B. N.; STEINDORFF, A. S.; BRITO, L. S. de; FORMIGHIERI, E. F. Repository: BDPA Publication year: 2016
TORNADO: an automated pipeline for de novo hybrid genome assembly based on free software packages for sanger and next generation sequencing technologies (NGS). Author(s): HERAI, R. H.; COSTA, G. G. D. L.; R. JÚNIOR, O.; VIDAL, R. O.; NASCIMENTO, L. C.; PARIZZI, L. P.; PEREIRA, G. G. A.; CARAZZOLLE, M. F. Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way and low cost, from unicellular to complex organisms, like plants and mammals. These sequences can b... ... Repository: BDPA Publication year: 2010
High-throughput sequencing applied for the identification of viruses infecting grapevines in Brazil and genetic variability analysis. Author(s): FAJARDO, T. V. M.; SILVA, F. N.; EIRAS, M.; NICKEL, O. The application of high-throughput sequencing technologies (HTS) enables the recovery of many nucleotide sequence fragments from diseased plants and may help in pathogen identification. This study was... ... Repository: BDPA Publication year: 2017
Fungal diversity and occurrence of mycotoxin producing fungi in tropical vineyards. Author(s): SILVA, L. D.; PEREIRA, G. E.; BATISTA, L. R.; MATTEOLI, F. P. Grapevine cultivars are distributed worldwide, nevertheless the fermentation of its grape berries renders distinct wine products that are highly associated to the local fungal community. Despite the s... ... Repository: BDPA Publication year: 2021

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