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Development of a computational pipeline to detect positive selection. Author(s): CINTRA, L. C.; HONGO, J. A.; LOBO, F. P. In this study we integrated several third-party software code generated by our team to develop a pipeline which detects positive selection in groups of homologous genes. Repository: BDPA Publication year: 2012
Highly efficient pipeline to perform integrated analysis of transposable elements and tandem repeats in complex genomes. Author(s): BRITO, L. S. de; FERREIRA FILHO, J. A.; SOUZA, M. S.; FORMIGHIERI, E. F. Repository: BDPA Publication year: 2016
Development of a pipeline for CNV detection and analysis using data from SNP arrays. Author(s): PEREIRA, F. C. de P.; HERAI, R. H.; GONÇALVES, A. R.; REGITANO, L. C. de A.; GIACHETTO, P. F. The objective of this study was to develop a bioinformatics pipeline for CNV identification and analysis from data generated by high density SNP chips genotyping from Illumina platform, which has been... ... Repository: BDPA Publication year: 2012
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. Author(s): NASCIMENTO, L. C. do; COSTA, G. G. L.; BINNECK, E.; PEREIRA, G. A. G.; CARAZZOLLE, M. F. The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved... ... Repository: BDPA Publication year: 2012
A pipeline to study structural interactions among Spodoptera frugiperda serine proteinases and plant proteinase inhibitors. Author(s): BRANDÃO, M. M.; ARRUDA, L. H.; MOURA, D. S.; NESHICH, G.; PEREIRA, J. G. C.; MALAGÓ, W. Jr; SILVA-FILHO, M. C. We propose here a computational biology pipeline to identify and analyze possible structural determinants that could explain some level of insensitivity by S. frugiperda serine proteinases (SPs) again... ... Repository: BDPA Publication year: 2010
Plant Co-expression Annotation Tool: a tool to identify targets for proof of concept in Genetically Modified crop breeding pipelines. Author(s): VIANA, M. J. A.; ZERLOTINI NETO, A.; MUDADU, M. de A. The purpose of this work is to characterize PUFs to be used in GM crops pipelines using orthology, co-expression networks and other tools. To date, we have downloaded, analyzed, and processed genomic... ... Repository: BDPA Publication year: 2019
Plant Co-expression Annotation Resource: a web server for identifying targets for genetically modified crop breeding pipelines. Author(s): VIANA, M. J. A.; ZERLOTINI NETO, A.; MUDADU, M. de A. Abstract. The development of genetically modified crops (GM) includes the discovery of candidate genes through bioinformatics analysis using genomics data, gene expression, and others. Proteins of unk... ... Repository: BDPA Publication year: 2021
Construção de um pipeline para identificação e análise de CNVs utilizando dados de chips de genotipagem de SNPs. Author(s): PEREIRA, F. C. de P.; GIACHETTO, P. F. O objetivo desse estudo foi construir um pipeline de bioinformática para a identificação e análise de CNVs a partir dos dados gerados pelos chips de genotipagem de SNPs da plataforma Illumina, o qual... ... Repository: BDPA Publication year: 2012
TORNADO: an automated pipeline for de novo hybrid genome assembly based on free software packages for sanger and next generation sequencing technologies (NGS). Author(s): HERAI, R. H.; COSTA, G. G. D. L.; R. JÚNIOR, O.; VIDAL, R. O.; NASCIMENTO, L. C.; PARIZZI, L. P.; PEREIRA, G. G. A.; CARAZZOLLE, M. F. Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way and low cost, from unicellular to complex organisms, like plants and mammals. These sequences can b... ... Repository: BDPA Publication year: 2010
Pipeline de detecção de laranjas a partir de vídeos. Author(s): VERALDI, T. P.; CAMARGO NETO, J.; SANTOS, T. T.; TERNES, S.; SOUZA, K. X. S. de RESUMO - A detecção de frutos utilizando vídeos, adquiridos em laranjais, é um processo que envolve a utilização de vários sistemas. Cada um é responsável por uma etapa do processo de detecção, sendo... ... Repository: BDPA Publication year: 2021

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