Publicações / Publications

2019

Spring Is Coming: Genetic Analyses of the Bud Break Date Locus Reveal Candidate Genes From the Cold Perception Pathway to Dormancy Release in Apple (Malus × domestica Borkh.). Miotto YE, Tessele C, Czermainski ABC, Porto DD, Falavigna VDS, Sartor T, Cattani AM, Delatorre CA, de Alencar SA, da Silva-Junior OB, Togawa RC, Costa MMDC, Pappas GJ Jr, Grynberg P, de Oliveira PRD, Kvitschal MV, Denardi F, Buffon V, Revers LF. Front Plant Sci. 2019 Mar 7;10:33. doi: 10.3389/fpls.2019.00033. eCollection 2019.

2018

Analysis of the Transcriptome in Aspergillus tamarii During Enzymatic Degradation of Sugarcane Bagasse Glaucia Emy Okida Midorikawa, Camila Louly Correa, Eliane Ferreira Noronha, Edivaldo Ximenes Ferreira Filho, Roberto Coiti Togawa, Marcos Mota do Carmo Costa, Orzenil Bonfim Silva-Junior, Priscila Grynberg, Robert Neil Gerard Miller Front Bioeng Biotechnol. 2018; 6: 123. Published online 2018 Sep 18. doi: 10.3389/fbioe.2018.00123

Independent and Joint-GWAS for growth traits in Eucalyptus by assembling genome-wide data for 3373 individuals across four breeding populations. Müller BSF, de Almeida Filho JE, Lima BM, Garcia CC, Missiaggia A, Aguiar AM, Takahashi E, Kirst M, Gezan SA, Silva-Junior OB, Neves LG, Grattapaglia D. New Phytol. 2018 Sep 25. doi: 10.1111/nph.15449. [Epub ahead of print]

Design and evaluation of a sequence capture system for genome-wide SNP genotyping in highly heterozygous plant genomes: a case study with a keystone Neotropical hardwood tree genome. Silva-Junior OB, Grattapaglia D, Novaes E, Collevatti RG. DNA Res. 2018 Oct 1;25(5):535-545. doi: 10.1093/dnares/dsy023.

Annotation of the Corymbia terpene synthase gene family shows broad conservation but dynamic evolution of physical clusters relative to Eucalyptus. Butler JB, Freeman JS, Potts BM, Vaillancourt RE, Grattapaglia D, Silva-Junior OB, Simmons BA, Healey AL, Schmutz J, Barry KW, Lee DJ, Henry RJ, King GJ, Baten A, Shepherd M. Heredity (Edinb). 2018 Jul;121(1):87-104. doi: 10.1038/s41437-018-0058-1. Epub 2018 Mar 10.

Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree. Silva-Junior OB, Grattapaglia D, Novaes E, Collevatti RG. Gigascience. 2018 Jan 1;7(1):1-16. doi: 10.1093/gigascience/gix125.

Comparative root transcriptome of wild Arachis reveals NBS-LRR genes related to nematode resistance Ana Paula Zotta Mota, Bruna Vidigal, Etienne G. J. Danchin, Roberto Coiti Togawa, Soraya C. M. Leal-Bertioli, David John Bertioli, Ana Claudia Guerra Araujo, Ana Cristina Miranda Brasileiro, Patricia Messenberg Guimaraes BMC Plant Biol. 2018; 18: 159. Published online 2018 Aug 6. doi: 10.1186/s12870-018-1373-7

Systemic and sex-biased regulation of OBP expression under semiochemical stimuli Débora Pires Paula, Roberto Coiti Togawa, Marcos Mota do Carmo Costa, Priscila Grynberg, Natália Florêncio Martins, David Alan Andow Sci Rep. 2018; 8: 6035. Published online 2018 Apr 16. doi: 10.1038/s41598-018-24297-z

2017

Mitogenome sequence accuracy using different elucidation methods Renata Velozo Timbó, Roberto Coiti Togawa, Marcos M. C. Costa, David A. Andow, Débora P. Paula PLoS One. 2017; 12(6): e0179971. Published online 2017 Jun 29. doi: 10.1371/journal.pone.0179971

Gene expression analysis in Musa acuminata during compatible interactions with Meloidogyne incognita Nancy Eunice Niño Castañeda, Gabriel Sergio Costa Alves, Rosane Mansan Almeida, Edson Perito Amorim, Claudia Fortes Ferreira, Roberto Coiti Togawa, Marcos Mota Do Carmo Costa, Priscila Grynberg, Jansen Rodrigo Pereira Santos, Juvenil Enrique Cares, Robert Neil Gerard Miller Ann Bot. 2017 Mar; 119(5): 915–930. Published online 2017 Jan 27. doi: 10.1093/aob/mcw272

Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus. Resende RT, Resende MD, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D. New Phytol. 2017 Feb;213(3):1287-1300. doi: 10.1111/nph.14266. Epub 2016 Nov 7

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model. Resende RT, Resende MDV, Silva FF, Azevedo CF, Takahashi EK, Silva-Junior OB, Grattapaglia D. Heredity (Edinb). 2017 Oct;119(4):245-255. doi: 10.1038/hdy.2017.37. Epub 2017 Jul 5.

2016

Complete Genome Sequences of Six Chrysodeixis includens Nucleopolyhedrovirus Isolates from Brazil and Guatemala Saluana R. Craveiro, Luis Arthur V. M. Santos, Roberto C. Togawa, Peter W. Inglis, Priscila Grynberg, Zilda Maria A. Ribeiro, Bergmann M. Ribeiro, Maria Elita B. Castro Genome Announc. 2016 Nov-Dec; 4(6): e01192-16. Published online 2016 Dec 8. doi: 10.1128/genomeA.01192-16

First Microsatellite Markers Developed from Cupuassu ESTs: Application in Diversity Analysis and Cross-Species Transferability to Cacao Lucas Ferraz dos Santos, Roberta Moreira Fregapani, Loeni Ludke Falcão, Roberto Coiti Togawa, Marcos Mota do Carmo Costa, Uilson Vanderlei Lopes, Karina Peres Gramacho, Rafael Moyses Alves, Fabienne Micheli, Lucilia Helena Marcellino PLoS One. 2016; 11(3): e0151074. Published online 2016 Mar 7. doi: 10.1371/journal.pone.0151074

Antimicrobial properties of two novel peptides derived from Theobroma cacao osmotin. Falcao LL, Silva-Werneck JO, Ramos Ade R, Martins NF, Bresso E, Rodrigues MA, Bemquerer MP, Marcellino LH. Peptides. 2016 May;79:75-82. doi: 10.1016/j.peptides.2016.03.006. Epub 2016 Mar 17.

Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneol synthase-a potential target to reduce Fusarium head blight disease. Bresso E, Leroux V, Urban M, Hammond-Kosack KE, Maigret B, Martins NF. J Mol Model. 2016 Jul;22(7):163. doi: 10.1007/s00894-016-3021-1. Epub 2016 Jun 21.

Identification and expression profile of odorant-binding proteins in Halyomorpha halys (Hemiptera: Pentatomidae). Paula DP, Togawa RC, Costa MM, Grynberg P, Martins NF, Andow DA. Insect Mol Biol. 2016 Oct;25(5):580-94. doi: 10.1111/imb.12243. Epub 2016 May 12. Erratum in: Insect Mol Biol. 2017 Apr;26(2):254.

GPCRs from fusarium graminearum detection, modeling and virtual screening - the search for new routes to control head blight disease Emmanuel Bresso, Roberto Togawa, Kim Hammond-Kosack, Martin Urban, Bernard Maigret, Natalia Florencio Martins BMC Bioinformatics. 2016; 17(Suppl 18): 463. Published online 2016 Dec 15. doi: 10.1186/s12859-016-1342-9

Searching for Novel Targets to Control Wheat Head Blight Disease—I-Protein Identification, 3D Modeling and Virtual Screening. Natália F. Martins, Emmanuel Bresso, Roberto C. Togawa, Martin Urban, John Antoniw, Bernard Maigret, Kim Hammond-Kosack. Advances in Microbiology, 2016, 6, 811-830 http://www.scirp.org/journal/aim ISSN Online: 2165-3410 ISSN Print: 2165-3402

AMORA, D. X.; BRESSO, E.; TOGAWA, R. C.; GRYNBERG, P.; MAIGRET, B.; MARTINS, N. F. Prediction of G protein coupled receptors from plant genomes. International Journal of Current Research in Biosciences and Plant Biology. 2016, v. 3, n. 11, p. 92-107. ID: 36522

BRESSO, E.; LEROUX, V.; URBAN, M.; HAMMOND-KOSACK, K. E.; MAIGRET, B.; MARTINS, N. F. Structure-based virtual screening of hypothetical inhibitors of the enzyme longiborneol synthase: a potential target to reduce Fusarium head blight disease. Journal of Molecular Modeling, 2016, v. 22, n. 7, article 163. ID: 36419

GRAHAM, S. A.; JOSÉ, G. P. C.; MURAD, A. M.; RECH, E. L.; CAVALCANTI, T. B. Patterns of fatty acid composition in seed oils of Cuphea, with new records from Brazil and Mexico. Industrial Crops and Products, v. 87, p. 379-391, 2016. (Acesso ao texto completo restrito à biblioteca) ID: 36554

MARTINS, N. F.; BRESSO, E.; TOGAWA, R. C.; URBAN, M.; ANTONIW, J.; MAIGRET, B.; HAMMOND-KOSACK, K. Searching for novel targets to control wheat Head Blight Disease-I-Protein identification, 3D modeling and virtual screening. Advances in Microbiology, v. 6, p. 811-830, 2016. ID: 36521

PAULA, D. P.; TOGAWA, R. C.; COSTA, M. M. C.; GRYNBERG, P.; MARTINS, N. F.; ANDOW, D. A. Identification and expression profile of odorant-binding proteins in Halyomorpha halys (Hemiptera: Pentatomidae). Insect Molecular Biology, v. 25, n. 5, p. 580-594, 2016. ID: 36502

2015

ABADIO, A. K. R.; KIOSHIMA, E. S.; LEROUX, V.; MARTINS, N. F.; MAIGRET, B.; FELIPE, M. S. S. Identification of new antifungal compounds targeting thioredoxin reductase of paracoccidioides genus. PLoS One, v. 10, n. 11, 2015. 18 p. ID: 36221

CRAVEIRO, S. R.; TOGAWA, R. C.; INGLIS, P. W.; GRYNBERG, P.; MELO, F. L.; RIBEIRO, Z. M. de A.; RIBEIRO, B. M.; BÁO, S. N.; CASTRO, M. E. B. de. The genome sequence of Pseudoplusia includens single nucleopolyhedrovirus and an analysis of p26 gene evolution in the baculoviruses. BMC GENOMICS, v.16, 2015. ID: 36055

FARIAS, L. R.; SCHIMMELPFENG, P. H. C.; TOGAWA, R. C.; COSTA, M. M. do C.; GRYNBERG, P.; MARTINS, N. F.; BORGES, M.; MORAES, M. C. B.; LAUMANN, R. A.; BÁO, S. N.; PAULA, D. P. Transcriptome-based identification of highly similar odorant-binding proteins among neotropical stink bugs and their egg parasitoid. PLoS One, 2015. ID: 36057

O'KEEFE, B. R.; MURAD, A. M.; VIANNA, G. R.; RAMESSAR, K.; SAUCEDO, C. J.; WILSON, J.; BUCKHEIT, K. W.; CUNHA, N. B. da; ARAUJO, A. C. G.; LACORTE, C. C.; MADEIRA, L.; MCMAHON, J. B.; RECH, E. L. Engineering soya bean seeds as a scalable platform to produce cyanovirin-N, a non-ARV microbicide against HIV. Plant Biotechnology Journal, p. 1-9, 2015. ID: 35869

SILVA JUNIOR, O. B. da; FARIA, D. A.; GRATTAPAGLIA, D. A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240 Eucalyptus tree genomes across 12 species. New Phytologist, v. 206, n. 4, p. 1527(14), 2015. ID: 36087

SILVA JUNIOR, O. B. da; GRATTAPAGLIA, D. Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history of Eucalyptus grandis. New Phytologist, v. 208, p. 830-845, 2015. ID: 36088

VAMVAKA, E.; TWYMAN, R. M.; MURAD, A. M.; MELNIK, S.; TEH, A. Y.; ARCALIS, E.; ALTMANN, F.; STOGER, E.; RECH, E.; MA, J. K. C.; CHRISTOU, P.; CAPELL, T. Rice endosperm produces an underglycosylated and potent form of the HIV-neutralizing monoclonal antibody 2G12. Plant Biotechnology Journal, p. 1-12, 2015. ID: 36079

VILLETH, G. R. C.; CARMO, L. S. T.; SILVA, L. P.; FONTES, W.; GRYNBERG, P.; SARAIVA, M.; BRASILEIRO, A. C. M.; CARNEIRO, R. M. D.; OLIVEIRA, J. T. A.; GROSSI-DE-SA, M. F.; MEHTA, A. Cowpea-Meloidogyne incognita interaction: root proteomic analysis during early stages of nematode infection. Proteomics, v. 15, p. 1746-1759, 2015.

2014

MURAD, A. M.; VIANNA, G. R.; MACHADO, A. M.; CUNHA, N. B. da; COELHO, C. M.; LACERDA, V. A. M.; COELHO, M. C.; RECH FILHO, E. L. Mass spectrometry characterisation of fatty acids from metabolically engineered soybean seeds. Analytical and Bioanalytical Chemistry, v. 406, n. 12, p. 2873-2883, 2014. ID: 35715

MYBURG, A. A.; GRATTAPAGLIA, D.; TUSKAN, G. A.; HELLSTEN, U.; et al. The genome of Eucalyptus grandis. Nature (London), v. 510, p. 356-362, 2014. ID: 35751

2013

PASSOS, M. A. N.; CRUZ, V. O. de; EMEDIATO, F. L.; TEIXEIRA, C. C. de; AZEVEDO, V. C. R.; BRASILEIRO, A. C. M.; AMORIM, E. P.; FERREIRA, C. F.; MARTINS, N. F.; TOGAWA, R. C.; PAPPAS JÚNIOR, G. J.; SILVA JUNIOR, O. B. da; MILLER, R.T N. G. Analysis of the leaf transcriptome of Musa acuminata during interaction with Mycosphaerella musicola: gene assembly, annotation and marker development. BMC Genomics, v.14, n.78, 2013. ID: 34700

SILVA, L. P. da; RECH FILHO, E. L. Unravelling the biodiversity of nanoscale signatures of spider silk fibres. Nature Communications, 4: 3014, 2013. ID: 34808

2010

TOGAWA, R. C.; SANTOS, C. M. R.; MILLER, R. N. G.; SOUZA JUNIOR, M. T.; MARTINS, N. F. DATAMusa - a database for ortholog genes from Musa. Tree and Forestry Science and Biotechnology, v. 4, special issue 1, 2010. ID: 33459

2009

ELSIK C. G.; TELLAM R. L.; WORLEY K. C.; GIBBS R. A. et al. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science, v. 324, p. 522-528, 2009. ID: 32236