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Computational biology in Brazil. Author(s): NESHICH, G. Increased economic activity boosted research investment. Government policies for research and development. Genomics and bioinformatics. The current state of computational biology: services versus rese... ... Repository: BDPA Publication year: 2007
Computational biology tools in design of an agrochemical against Xylella fastidiosa. Author(s): FULAZ, S. F.; CABRINI, F.; TASIC, L.; BORRO, L.; NESHICH, G. Xylella fastidiosa is a Gram-negative, non-flagellated bacterium that causes CVC in citrus and Pierce?s disease in grapevines. The CVC affects 40% of the 200 million orange trees in São Paulo state. I... ... Repository: BDPA Publication year: 2015
Computational Biology tools in design of an agrochemical against Xylella fastidiosa. Author(s): FULAZ, S. F.; CABRINI, F. M.; BORRO, L.; TASIC, L.; NESHICH, G. Since its pathogenicity is related to bacterial motility, the protein PilT from the twitching motility system has been chosen as the host target. Using rational drug design, based on a detailed compre... ... Repository: BDPA Publication year: 2015
Computational investigations in eukaryotes genome de novo assembly using short reads. Author(s): CINTRA, L. C. Recently news technologies in molecular biology enormously improved the sequencing data production, making it possible to generate billions of short reads totalizing gibabases of data per experiment.... ... Repository: BDPA Publication year: 2011
POTION: a massive parallel program for identification of homologous genes under positive selection on genomic scale datasets. Author(s): HONGO, J.; CASTRO, G.; SILVA, F.; CINTRA, L.; ZERLOTINI, A.; LOBO, F. The search for positive selection is also highly parallelizable, since each group of homologous can be analyzed independently. Here we describe POTION (POsitive selecTION), a massively parallel softwa... ... Repository: BDPA Publication year: 2012
TORNADO: an automated pipeline for de novo hybrid genome assembly based on free software packages for sanger and next generation sequencing technologies (NGS). Author(s): HERAI, R. H.; COSTA, G. G. D. L.; R. JÚNIOR, O.; VIDAL, R. O.; NASCIMENTO, L. C.; PARIZZI, L. P.; PEREIRA, G. G. A.; CARAZZOLLE, M. F. Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way and low cost, from unicellular to complex organisms, like plants and mammals. These sequences can b... ... Repository: BDPA Publication year: 2010
Using Galaxy to facilitate RNA-Seq analysis. Author(s): NAGAI, L. A. E.; SILVA, F. R.; CINTRA, L. C.; GIACHETTO, P. F.; ZERLOTINI NETO, A. In this experiment, two RNA-Seq datasets were analyzed in order to evaluate both, the Galaxy platform and the RNA-Seq analysis suite. We were able to observe that such combination of softwares is real... ... Repository: BDPA Publication year: 2012
CNBi: the new Brazilian National Consortium for Bioinformatics. Author(s): HERAI, R. H.; VIDAL, R. O.; CARAZZOLLE, M. F.; COSTA, G. G. L.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; FRANCHINI, K. G.; PEREIRA, G. G. A. PRESENTATION: The National Consortium for Bioinformatics (CNBi) is a multidisciplinary center dedicated to research, development, management and technical support on questions arising from bioinformat... ... Repository: BDPA Publication year: 2010
Zebu genome sequencing and analysis using second generation technology. Author(s): ZERLOTINI, A.; ARAÚJO, F.; DRUMOND, B.; ROSSE, I.; CUADROS-ORELLANA, S.; LOPEZ, B.; GUEDES, E.; ARBEX, W. A.; MACHADO, M. A.; PEIXOTO, M. G. C. D.; VERNEQUE, R. da S.; MARTINS, M. F.; COIMBRA, R.; CARVALHO, M. R.; SILVA, M. V. G. B.; OLIVEIRA, G. Repository: BDPA Publication year: 2011
Preliminary validation study for SNPs associated to rib eye area in Canchim beef cattle. Author(s): MOKRY, F. B.; LIMA, A. O. de; HIGA, R. H.; MUDADU, M. de A.; MEIRELLES, S. L. C.; REGITANO, L. C. de A. Repository: BDPA Publication year: 2013

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