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Genome sequencing and de novo assembly of tambaqui (Colossoma macropomum). Author(s): CAETANO, A. R.; IANELLA, P.; VARELA, E. S.; PAIVA, S. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI NETO, A.; YAMAGISHI, M. E. B. The South American freshwater fish Tambaqui (Colossoma macropomum) is the most important native aquaculture species in Brazil. Current production levels are above 150,000 mt per year. Recent efforts t... ... Repository: BDPA Publication year: 2019
Computational investigations in eukaryotes genome de novo assembly using short reads. Author(s): CINTRA, L. C. Recently news technologies in molecular biology enormously improved the sequencing data production, making it possible to generate billions of short reads totalizing gibabases of data per experiment.... ... Repository: BDPA Publication year: 2011
Sequencing and de novo genome assembly of a nelore (Bos indicus) bull. Author(s): CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P.; SILVA, F. R. da; GIACHETTO, P. F.; KUSER-FALCÃO, P. R.; SILVA, L. O. C. da; EGITO, A. A. do; SIQUEIRA, F.; SILVA, N. M. A. da; PAIVA, S. R.; YAMAGISHI, M. E. B.; CAETANO, A. R. Bos indicus cattle breeds have been extensively used for dairy and beef production in tropical climates and present several natural adaptations to biotic and abiotic stresses found in these regions of... ... Repository: BDPA Publication year: 2013
De novo transcriptome assembly for the tropical grass Panicum maximum Jacq. Author(s): SILVA, G. T.; SILVA, C. B. C.; JANK, L.; SOUZA, A. P. Guinea grass (Panicum maximum Jacq.) is a tropical African grass often used to feed beef cattle, which is an important economic activity in Brazil. Brazil is the leader in global meat exportation beca... ... Repository: BDPA Publication year: 2013
Genome Sequencing and de novo assembly of the South American Tiger Catfish (Pseudoplatystoma punctifer). Author(s): LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; SILVA, N. M. A. da; IANELLA, P.; PAIVA, S. R.; CAETANO, A. R. The South American Tiger Catfish (Pseudoplatystoma punctifer) is a freshwater fish species naturally found in the Amazon river basin with an important role in local community and commercial fishing. R... ... Repository: BDPA Publication year: 2016
Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. Author(s): ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. This represents the first report of a draft genome sequence for this species, which will be avaluable resource for basic biology studies, and marker detection/selection for use in genetic improvement... ... Repository: BDPA Publication year: 2019
de novo Assembly and transcriptome analysis of sugarcane leaves from contrasting varieties submitted to prolonged water stress. Author(s): BELESINI, A. A.; TELLES, B. R.; CASTRO, G. M. de; GIACHETTO, P. F.; VANTINI, J. da S.; CARVALHO, F. M. de S.; CARLIN, S. R.; CAZETTA, J. O.; FERRO, M. I. T.; PINHEIRO, D. G. Sugarcane is an important crop, major source of sugar and alcohol, accounting for two-thirds of the world's sugar production. In Brazil, the sugarcane culture has expanded to areas with prolonged drou... ... Repository: BDPA Publication year: 2016
De novo transcriptome assembly of sugarcane leaves submitted to prolonged water-deficit stress. Author(s): BELESINI, A. A.; CARVALHO, F. M. S.; TELLES, B. R.; CASTRO, G. M. de; GIACHETTO, P. F.; VANTINI, J. S.; CARLIN, S. D.; CAZETTA, J. O.; PINHEIRO, D. G.; FERRO, M. I. T. ABSTRACT. Sugarcane production is strongly influenced by drought, which is a limiting factor for agricultural productivity in the world. In this study, the gene expression profiles obtained by de novo... ... Repository: BDPA Publication year: 2017
De novo assembly of tung tree seeds transcriptome. Author(s): GALLI, V.; MESSIAS, R. da S.; SILVA, S. D. dos A. e; MARGIS, R. Repository: BDPA Publication year: 2014
TORNADO: an automated pipeline for de novo hybrid genome assembly based on free software packages for sanger and next generation sequencing technologies (NGS). Author(s): HERAI, R. H.; COSTA, G. G. D. L.; R. JÚNIOR, O.; VIDAL, R. O.; NASCIMENTO, L. C.; PARIZZI, L. P.; PEREIRA, G. G. A.; CARAZZOLLE, M. F. Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way and low cost, from unicellular to complex organisms, like plants and mammals. These sequences can b... ... Repository: BDPA Publication year: 2010

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