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Detection of antileukemia metabolites from P. limosum integrating genome mining, metabolomic analysis and cytotoxicity assays. Author(s): BASSICHETO, M.; OLIVEIRA, C.; RIVERO, M.; SIPOLONI, V.; SOARES, J. K. C.; SILVA, G. F. da; JUSTO, G.; VEIGA, T.; SOMAN, L. Chemical dereplication and genome mining approaches were applied to detect cytotoxic metabolites produced by P. limosum CMLD 19 with anticancer potential against human leukemia cells. During the ongoi... ... Repository: BDPA Publication year: 2023
Genome mining of the rhizophere bacterium Pseudomonas sp. SH-C52. Author(s): VOORT, M. V. D.; SCHMIDT, Y.; WATROUS, J.; MENDES, R.; GROSS, H.; DORRESTEIN, P. C.; RAAIJMAKERS, J. M. Repository: BDPA Publication year: 2012
Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: an example using soybean. Author(s): BELARMINO, L. C.; OLIVEIRA, A. R. da S.; BRASILEIRO-VIDAL, A. C.; BORTOLETI, K. C. de A.; BEZERRA-NETO, J. P.; ABDELNOOR, R. V.; BENKO-ISEPPON, A. M. Physical maps are important tools to uncover general chromosome structure as well as to compare different plant lineages and species, helping to elucidate genome structure, evolution and possibilities... ... Repository: BDPA Publication year: 2012
Characterization of peptaibols produced by a marine strain of the fungus Trichoderma endophyticum via Mass Spectrometry, genome mining and phylogeny-based prediction. Author(s): CASTRO, G. S.; SOUZA, T. F.; SILVA, G. F. da; PEDROSO, R. C. N.; MENEZES, K. S.; SOARES, M. A.; DIAS, G. M.; SANTOS, A. O.; YAMAGISHI, M. E. B.; FARIA, J. V.; JANUÁRIO, A. H.; KOOLEN, H. H. F. Trichoderma is recognized as a prolific producer of nonribosomal peptides (NRPs) known as peptaibols, which have remarkable biological properties, such as antimicrobial and anticancer activities, as w... ... Repository: BDPA Publication year: 2023
Genome mining and metabolic profiling of the rhizosphere bacterium Pseudomonas sp. SH-C52 for antimicrobial compounds. Author(s): VOORT, M. van der; MEIJER, H. J. G.; SCHMIDT, Y.; WATROUS, J; DEKKERS, E.; MENDES, R.; DORRESTEIN, P. C; GROSS, H.; RAAIJMAKERS, J. M. Abstract: The plant microbiome represents an enormous untapped resource for discovering novel genes and bioactive compounds. Previously, we isolated Pseudomonas sp. SH-C52 from the rhizosphere of suga... ... Repository: BDPA Publication year: 2015
In silico identification of coffee genome expressed sequences potentially associated with resistance to diseases. Author(s): ALVARENGA, S. M.; CAIXETA, E. T.; HUFNAGEL, B.; THIEBAUT, F.; ZAMBOLIM, E. M.; ZAMBOLIM, L.; SAKIYAMA, N. S. Sequences potentially associated with coffee resistance to diseases were identified by in silico analyses using the database of the Brazilian Coffee Genome Project (BCGP). Keywords corresponding to pl... ... Repository: BDPA Publication year: 2010
Genome-wide mapping of loci explaining variance in scrotal circumference in Nellore Cattle. Author(s): UTSUNOMIYA, Y. T.; CARMO, A. S.; NEVES, H. H. R.; CARVALHEIRO, R.; MATOS, M. C.; ZAVAREZ, L. B.; ITO, P. K. R. K.; O'BRIEN, A. M. P.; SOLKNER, J.; PORTO-NETO, L. R.; SCHENKEL, F. S.; McEWAN, J.; COLE, J. B.; SILVA, M. V. G. B.; VAN TASSELL, C. P.; SONSTEGARD, T. S.; GARCIA, J. F. The reproductive performance of bulls has a high impact on the beef cattle industry. Scrotal circumference (SC) is the most recorded reproductive trait in beef herds, and is used as a major selection... ... Repository: BDPA Publication year: 2014
Machado: open source genomics data integration framework. Author(s): MUDADU, M. de A.; ZERLOTINI NETO, A. Abstract. Background: Genome projects and multiomics experiments generate huge volumes of data that must be stored, mined, and transformed into useful knowledge. All this information is supposed to be... ... Repository: BDPA Publication year: 2020
New EST-SSR markers of Coffea arabica: transferability and application to studies of molecular characterization and genetic mapping. Author(s): FERRÃO, L. F. V.; CAIXETA, E. T.; PENA, G.; ZAMBOLIM, E. M.; CRUZ, C. D.; ZAMBOLIM, L.; FERRAO, M. A. G.; SAKIYAMA, N. S. Microsatellite markers (SSR) have broad utility in genetic studies due to a high rate of polymor-phisms, a codominant nature and multiallelism. EST?SSRs are markers derived from the expressed sequence... ... Repository: BDPA Publication year: 2015
Genome-wide association analysis to identify loci for production traits in gyr breed. Author(s): GUEDES, E.; ANDRADE, L. G. DE; ARBEX, W. A.; MARTINS, M. F.; MACHADO, M. A.; VERNEQUE, R. da S.; PANETTO, J. C. do C.; BRUNELI, F. A. T.; SILVA, M. V. G. B. Repository: BDPA Publication year: 2011

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