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An integrated database of structural parameters for protein analysis. Author(s): OLIVEIRA, S. R. de M.; ALMEIDA, G. V.; SOUZA, K. R. R.; RODRIGUES, D. N.; NESHICH, G.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; SANTOS, E. H. dos; VIEIRA, F. D.; JARDINE, J. G. Short Abstract: STING_DB is a relational database composed of structural parameters for protein analysis operating with a collection of both publicly available data (PDB, HSSP, Prosite) and its own da... ... Repository: BDPA Publication year: 2006
Structural analysis of the protein twitching motility. Author(s): JARDINE, J. G.; NESHICH, G.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; OLIVEIRA, S. R. de M.; MAZONI, I.; SANTOS, E. H. dos; VIEIRA, F. D.; MARANGONI, S.; MARTINS, D.; WINCK, F. V.; NOVELLO, J. C.; PAPINE, J. M.; VIEIRA, M. S. Short Abstract: We have concentrated our effort in understanding some crucial features of protein Twitching Motility of Xylella fastidiosa. Our study is based on the model of this protein, constructed... ... Repository: BDPA Publication year: 2006
The Star STING server: a multiplatform environment for protein structure analysis. Author(s): NESHICH, G.; MAZONI, I.; OLIVEIRA, S. R. M.; YAMAGISHI, M. E. B.; KUSER-FALCÃO, P. R.; BORRO, L. C.; MORITA, D. U.; SOUZA, K. R. R.; ALMEIDA, G. V.; RODRIGUES, D. N.; JARDINE, J. G.; TOGAWA, R. C.; MANCINI, A. L.; HIGA, R. H.; CRUZ, S. A. B.; VIEIRA, F. D.; SANTOS, E. H.; MELO, R. C.; SANTORO, M. M. ABSTRACT. Star STING is the latest version of the STING suite of programs and corresponding database. We report on five important aspects of this package that have acquired some new characteristics, d... ... Repository: BDPA Publication year: 2006
BlueStar STING platform for analysis of protein structure / function relationship: designing agrochemicals to fit new protein targets for bacterial, fungal and insect control. Author(s): NESHICH, G. Blue Star STING suite of programs for comprehensive analysis of structure, function and stability of proteins and their complexes, has matured over a decade of development. We will present the in sili... ... Repository: BDPA Publication year: 2012
Sting_RDB: a relational database of structural parameters for protein analysis with support for data warehousing and data mining. Author(s): OLIVEIRA, S. R. de M.; ALMEIDA, G. V.; SOUZA, K. R. R.; RODRIGUES, D. N.; KUSER-FALCÃO, P. R.; YAMAGISHI, M. E. B.; SANTOS, E. H. dos; VIEIRA, F. D.; JARDINE, J. G.; NESHICH, G. Abstract. An effective strategy for managing protein databases is to provide mechanisms to transform raw data into consistent, accurate and reliable information. Such mechanisms will greatly reduce op... ... Repository: BDPA Publication year: 2007
Molecular modeling and structural analysis of the Myelin basic protein-Q65ZS4. Author(s): JARDINE, J. G.; NESHICH, G.; MAZONI, I.; MARTINS, D.; MARANGONI, S.; NOVELLO, J. C.; GATTAZ, W. F.; DIAS-NETO, E. Schizophrenia (SCZ) is a chronic, debilitating psychotic mental disorder that affects about 1 percent of the population in different countries. Scz is characterized by a series of negative and positiv... ... Repository: BDPA Publication year: 2007
BlueStar STING - a multiplatform environment for protein structure analysis. Author(s): KUSER, P.; YAMAGISHI, M. E. B.; OLIVEIRA, S. R. M.; MAZONI, I.; SANTOS, E. H. dos; VIEIRA, F. D.; JARDINE, J. G.; BORRO, L. C.; NESHICH, G. BlueStar STING is the latest version of the STING suite of programs and corresponding database. STING continues to build on what is considered its major asset: a principal DB of per-residue-reported d... ... Repository: BDPA Publication year: 2006
Development of a suite of bioinformatics tools for the analysis and prection of membrane protein structure. Author(s): TOGAWA, R. C. This thesis describes the development of a novel approach for prediction of the three-dimensional structure of transmembrane regions of membrane proteins directly from amino acid sequence and basic tr... ... Repository: BDPA Publication year: 2006
Electrostatic potential calculation for biomolecules - creating a database of pré-calculated values reported on a per residue basis for all PDB protein structures. Author(s): ROCCHIA, W.; NESHICH, G. Abstract. STING and JavaProtein Dossier provide a collection of physical-chemical parameters, describing protein structure, stability, function, and interaction, considered one of the most comprehensi... ... Repository: BDPA Publication year: 2007
MSSP: simultaneous comparison of the same structure descriptor for different protein structures. Author(s): MAZONI, I.; KUSER, P.; YAMAGISHI, M.; BORRO, L.; JARDINE, J.; SANTOS, E. H. dos; OLIVEIRA, S. R. de M.; NESHICH, G. Short Abstract: The Multiple Structures - Single Parameter STING module allows a user to compare variety of structure parameters from different protein structures in a simple yet intuitive 2D pilot. T... ... Repository: BDPA Publication year: 2006

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