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In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping. Author(s): VALDISSER, P. A. M. R.; PEREIRA, W. J.; ALMEIDA FILHO, J. E.; MÜLLER, B. S. F.; COELHO, G. R. C.; MENEZES, I. P. P. de; VIANNA, J. P. G.; ZUCCHI, M. I.; LANNA, A. C.; COELHO, A. S. G.; OLIVEIRA, J. P. de; MORAES, A. da C.; BRONDANI, C.; VIANELLO, R. P. Background: Common bean is a legume of social and nutritional importance as a food crop, cultivated worldwide especially in developing countries, accounting for an important source of income for small... ... Repository: BDPA Publication year: 2017
SNP markers found in non-coding regions can distinguish among low-variant genotypes of arabica and other coffee species. Author(s): BOLÍVAR-GONZÁLEZ, L.; MOLINA-BRAVO, R.; SOLANO-SÁNCHEZ, W.; ARAYA-VALVERDE, E.; IVAMOTO-SUZUKI, S. T.; PEREIRA, L. F. P.; GATICA-ARIAS, A. Development of efficient and scalable methods for molecular identification of Coffea spp. are necessary to accelerate studies related to the characterization of germplasm for both conservation or bree... ... Repository: BDPA Publication year: 2022
Discovery of candidate genes for fatness in chickens based on genotyping with 600K SNP chip in a QTL region. Author(s): MOREIRA, G. C. M.; PÉRTILLE, F.; GODOY, T. F.; BRASSOLOTI, R.; BOSCHIERO, C.; LEDUR, M. C.; COUTINHO, L. L. Repository: BDPA Publication year: 2014
Design and evaluation of a sequence capture systemfor genome-wide SNP genotyping in highly heterozygous plant genomes: a case studywith a keystone Neotropical hardwood tree genome. Author(s): SILVA JUNIOR, O. B. da; GRATTAPAGLIA, D.; NOVAES, E.; COLLEVATTI, R. G. Repository: BDPA Publication year: 2018
Genotype imputation strategies for Portuguese Holstein cattle using different SNP panels. Author(s): SILVA, A. A.; SILVA, F. F.; SILVA, D. A.; SILVA, H. T.; COSTA, C. N.; LOPES, P. S.; VERONEZE, R.; THOMPSON, G.; CARVALHEIRA, J. Although several studies have investigated the factors affecting imputation accuracy, most of these studies involved a large number of genotyped animals. Thus, results from these studies cannot be dir... ... Repository: BDPA Publication year: 2019
SNP genotyping allows an in-depth characterisation of the genome of sugarcane and other complex autopolyploids. Author(s): GARCIA, A. A. F.; MOLLINARI, M.; MARCONI, T. G.; SERANG, O. R.; SILVA, R. R.; VIEIRA, M. L. C.; VICENTINI, R.; COSTA, E. A.; MANCINI, M. C.; GARCIA, M. O. S.; PASTINA, M. M.; GAZAFFI, R.; MARTINS, E. R. F.; DAHMER, N.; SFORÇA, D. A.; SILVA, C. B. C.; BUNDOCK, P.; HENRY, R. J.; SOUZA, G. M.; SLUYS, M.-A. V.; LANDELL, M. G. A.; CARNEIRO, M. S.; VINCENTZ, M. A. G.; PINTO, L. R.; VENCOVSKY, R.; SOUZA, A. P. Many plant species of great economic value (e.g., potato, wheat, cotton, and sugarcane) are polyploids. Despite the essential roles of autopolyploid plants in human activities, our genetic understandi... ... Repository: BDPA Publication year: 2013
Strategies for single nucleotide polymorphism (SNP) genotyping to enhance genotype imputation in Gyr (Bos indicus) dairy cattle: Comparison of commercially available SNP chips. Author(s): BOISON, S. A.; SANTOS, D. J. A.; UTSONOMIYA, A. H. T.; CARVALHEIRO, R.; NEVES, H. H. R.; O'BRIEN, A. M. P.; GARCIA, J. F.; SÖLKNER, J.; SILVA, M. V. G. B. Genotype imputation is widely used as a cost-effective strategy in genomic evaluation of cattle. Key determinants of imputation accuracies, such as linkage disequilibrium patterns, marker densities, a... ... Repository: BDPA Publication year: 2015
Copy number variation discovery in canchim cattle using data from SNP genotyping arrays. Author(s): GONÇALVES, A. R.; PEREIRA, F. C. de P.; REGITANO, L. C. de A.; GIACHETTO, P. F. Data from cattle genotyping using SNP arrays for genome-wide association studies, is widely available at Embrapa. The objective os this study was to use an open source tool, CNstream, for CNV identifi... ... Repository: BDPA Publication year: 2012
Detection of copy number variations in nelore beef cattle with high-density SNP genotyping data. Author(s): SILVA, J. M. da; GIACHETTO, P. F.; SILVA, L. O. C. da; PAIVA, S. R.; CAETANO, A. R.; YAMAGISHI, M. E. B. Genome-wide single nucleotide polymorphism (SNP) genotyping platforms have been widely used in studies in diverse areas, ranging from population genetics to applied genetic improvement and breeding. S... ... Repository: BDPA Publication year: 2014
Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping. Author(s): PORTO-NETO, L. R.; SONSTEGARD, T. S.; LIU, G. E.; BICKHART, D. M.; SILVA, M. V. G. B.; MACHADO, M. A.; UTSUNOMIYA, Y. T.; GARCIA, J. F.; GONDRO, C.; VAN TASSELL, C. P. Background - Natural selection has molded evolution across all taxa. At an arguable date of around 330,000 years ago there were already at least two different types of cattle that became ancestors of... ... Repository: BDPA Publication year: 2013

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