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Draft genome assembly of forage peanut (Arachis pintoi). Author(s): OLIVEIRA, J. C. de; ASSIS, G. M. L. de; CAMPOS, T. de; PESSOA FILHO, M. This work presents a draft genome assembly of A. pintoi based on third-generation HiFi reads. Repository: BDPA Publication year: 2024
Sequencing and de novo genome assembly of a nelore (Bos indicus) bull. Author(s): CINTRA, L. C.; ZERLOTINI, A.; LOBO, F. P.; SILVA, F. R. da; GIACHETTO, P. F.; KUSER-FALCÃO, P. R.; SILVA, L. O. C. da; EGITO, A. A. do; SIQUEIRA, F.; SILVA, N. M. A. da; PAIVA, S. R.; YAMAGISHI, M. E. B.; CAETANO, A. R. Bos indicus cattle breeds have been extensively used for dairy and beef production in tropical climates and present several natural adaptations to biotic and abiotic stresses found in these regions of... ... Repository: BDPA Publication year: 2013
de novo genome assembly of the South American freshwater fish Tambaqui (Colossoma macropomum). Author(s): LOBO, F. P.; CINTRA, L. C.; VARELA, E. S.; ALVES, A. L.; VILLELA, L. C. V.; SILVA, N. M. A. da; PAIVA, S. R.; CAETANO, A. R. The Tambaqui (Colossoma macropomum) is a freshwater fish species naturally found in the Amazon river basin which has historically been widely exploited by community and commercial fishing. Recent effo... ... Repository: BDPA Publication year: 2015
Efficient gap-closure of eukaryotic genome sequence assemblies by third-generation sequencing. Author(s): CRUZ, I. R. da C.; GERALDO, J. A.; LEITE, L. R.; ZERLOTINI, A.; ARAÚJO, F.; SILVA, M. V. G. B.; COIMBRA, R. S.; CARVALHO, M. R. S.; OLIVEIRA, G. Recently, we produced the first draft assemblies of Guzerá and Gir genomes. Two Zebu (Bos indicus) breeds adapted to tropical climate and under genetic evaluation to milk purposes in Brazil. Repository: BDPA Publication year: 2012
A chromosome scale genome assembly of pensacola bahiagrass (paspalum notatum cv. pensacola). Author(s): ARAKAKI, J. E.; VIGNA, B. B. Z.; PESSOA FILHO, M. A. C. de P.; MUDADU, M. de A.; RIOS, E.; FAVERO, A. P. The development of new, cost-effective sequencing technologies, along with user-friendly computational tools, facilitates genomic studies of non-model species. Paspalum notatum is an important forage... ... Repository: BDPA Publication year: 2023
Computational investigations in eukaryotes genome de novo assembly using short reads. Author(s): CINTRA, L. C. Recently news technologies in molecular biology enormously improved the sequencing data production, making it possible to generate billions of short reads totalizing gibabases of data per experiment.... ... Repository: BDPA Publication year: 2011
A draft genome assembly for the forage grass Urochloa ruziziensis based on single-molecule real-time sequencing. Author(s): PESSOA FILHO, M. A. C. de P.; SOUZA SOBRINHO, F. de; FRAGOSO, R. da R.; SILVA JUNIOR, O. B. da; FERREIRA, M. E. ABSTRACT: Ruzigrass (Urochloa ruziziensis) is a diploid, tropical forage grass native to Africa, widely planted in Brazil, and known for its high nutritional quality. It is closely related to other im... ... Repository: BDPA Publication year: 2018
Dihaploid Coffea arabica genome sequencing and assembly. Author(s): KOCHKO, A. de; CROUZILLAT, D.; RIGOREAU, M.; LEPELLEY, M.; BELLANGER, L.; L'ANTHOENE, V. M.; VANDECASTEELE, C.; GUYOT, R.; PONCET, V.; TRANCHANT, C.; HAMON, P.; HAMON, S.; COUTURON, E.; DESCOMBES, P.; MOINE, D.; MUELLER, L.; STRICKLER, S. R.; ANDRADE, A.; PEREIRA, L. F. P.; MARRACCINI, P.; GIULIANO, G.; FIORE, A.; PIETRELLA, M.; APREA, G.; MING, R.; WAI, J.; DOMINGUES, D. S.; PASCHOAL, A.; KUHN, G.; KORLACH, J.; CHIN, J.; SANKOFF, D.; ZHENG, C.; ALBERT, V. A. Coffea arabica which accounts for 70% of world coffee production is an allotetraploid with a genome size of approximately 1.3 Gb and is derived from the hybridization of C. canephora (710 Mb) and C. e... ... Repository: BDPA Publication year: 2015
Genome sequencing and de novo assembly of the South American tiger catfish (Pseudoplatystoma Punctifer) using 10X sequencing data. Author(s): ZERLOTINI NETO, A.; LOBO, F. P.; CINTRA, L. C.; YAMAGISHI, M. E. B.; VARELA, E. S.; PAIVA, S. R.; IANELLA, P.; CAETANO, A. R. Repository: BDPA Publication year: 2019
TORNADO: an automated pipeline for de novo hybrid genome assembly based on free software packages for sanger and next generation sequencing technologies (NGS). Author(s): HERAI, R. H.; COSTA, G. G. D. L.; R. JÚNIOR, O.; VIDAL, R. O.; NASCIMENTO, L. C.; PARIZZI, L. P.; PEREIRA, G. G. A.; CARAZZOLLE, M. F. Next generation sequence technologies (NGS) made possible to sequence entirely genomes in a fast way and low cost, from unicellular to complex organisms, like plants and mammals. These sequences can b... ... Repository: BDPA Publication year: 2010

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