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Large scale protein function prediction tools. In this project we intend to reinforce a recent collaboration established between two French and Brazilian bioinformatics laboratories for the development of a structural genomics approach to function... ... Repository: BDPA Publication year: 2009
Improving binding affinity prediction by using a rule-based model with physical-chemical and structural descriptors of the nano-environment for protein-ligand interactions. In order to improve binding affinity prediction, we developed a new scoring function, named STINGSF, derived from physical-chemical and structural features that describe the protein-ligand interaction... ... Repository: BDPA Publication year: 2015
Binding affinity prediction using a nonparametric regression model based on physicochemical and structural descriptors of the nano-environment for protein-ligand interactions. We propose a new empirical scoring function for binding affinity prediction modeled based on physicochemical and structural descriptors that characterize the nano-environment that encompass both ligan... ... Repository: BDPA Publication year: 2016
Predicting enzyme class from protein structure using Bayesian classification. ABSTRACT. Predicting enzyme class from protein structure parameters is a challenging problem in protein analysis. We developed a method to predict enzyme class that combines the strengths of statistic... ... Repository: BDPA Publication year: 2006
Basic aspects for choosing crops for recombinant production of therapeutic and industrial molecules. Repository: BDPA Publication year: 2018
Prediction of binding hot spot residues by using structural and evolutionary parameters. In this work, we present a method for predicting hot spot residues by using a set of structural and evolutionary parameters. Unlike previous studies, we use a set of parameters which do not depend on... ... Repository: BDPA Publication year: 2009
The Diamond STING Server. Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new... ... Repository: BDPA Publication year: 2005
Chemical composition of tempeh from soybean cultivars specially developed for human consumption. Repository: BDPA Publication year: 2012
Plant Co-expression Annotation Tool: a tool to identify targets for proof of concept in Genetically Modified crop breeding pipelines. The purpose of this work is to characterize PUFs to be used in GM crops pipelines using orthology, co-expression networks and other tools. To date, we have downloaded, analyzed, and processed genomic... ... Repository: BDPA Publication year: 2019
Dissecting protein domain variability in the core rna interference machinery of five insect orders. RNA interference (RNAi)-mediated gene silencing can be used to control specific insect pest populations. Unfortunately, the variable efficiency in the knockdown levels of target genes has narrowed the... ... Repository: BDPA Publication year: 2021

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