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Large scale protein function prediction tools. Author(s): MINARDI, R. C. de M.; ARTIGUENAVE, F.; NESHICH, G. In this project we intend to reinforce a recent collaboration established between two French and Brazilian bioinformatics laboratories for the development of a structural genomics approach to function... ... Repository: BDPA Publication year: 2009
Improving binding affinity prediction by using a rule-based model with physical-chemical and structural descriptors of the nano-environment for protein-ligand interactions. Author(s): BORRO, L. C.; SALIM, J. A.; MAZONI, I.; YANO, I.; JARDINE, J. G.; NESHICH, G. In order to improve binding affinity prediction, we developed a new scoring function, named STINGSF, derived from physical-chemical and structural features that describe the protein-ligand interaction... ... Repository: BDPA Publication year: 2015
Binding affinity prediction using a nonparametric regression model based on physicochemical and structural descriptors of the nano-environment for protein-ligand interactions. Author(s): BORRO, L.; YANO, I. H.; MAZONI, I.; NESHICH, G. We propose a new empirical scoring function for binding affinity prediction modeled based on physicochemical and structural descriptors that characterize the nano-environment that encompass both ligan... ... Repository: BDPA Publication year: 2016
Predicting enzyme class from protein structure using Bayesian classification. Author(s): BORRO, L. C.; OLIVEIRA, S. R. M.; YAMAGISHI, M. E. B.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; HIGA, R. H.; KUSER, P. R.; NESHICH, G. ABSTRACT. Predicting enzyme class from protein structure parameters is a challenging problem in protein analysis. We developed a method to predict enzyme class that combines the strengths of statistic... ... Repository: BDPA Publication year: 2006
Chemical composition of tempeh from soybean cultivars specially developed for human consumption. Author(s): BAVIA, A. C. F.; SILVA, C. E. da; FERREIRA, M. P.; LEITE, R. S.; LEITE, R. S.; MANDARINO, J. M. G.; CARRÃO-PANIZZI, M. C. Repository: BDPA Publication year: 2012
Plant Co-expression Annotation Tool: a tool to identify targets for proof of concept in Genetically Modified crop breeding pipelines. Author(s): VIANA, M. J. A.; ZERLOTINI NETO, A.; MUDADU, M. de A. The purpose of this work is to characterize PUFs to be used in GM crops pipelines using orthology, co-expression networks and other tools. To date, we have downloaded, analyzed, and processed genomic... ... Repository: BDPA Publication year: 2019
Multi-trait multi-environment models in the genetic selection of segregating soybean progeny. Author(s): VOLPATO, L.; ALVES, R. S.; TEODORO, P. E.; RESENDE, M. D. V. de; NASCIMENTO, M.; NASCIMENTO, A. C. C.; LUDKE, W. H.; SILVA, F. L. da; BORÉM, A. At present, single-trait best linear unbiased prediction (BLUP) is the standard method for genetic selection in soybean. However, when genetic selection is performed based on two or more genetically c... ... Repository: BDPA Publication year: 2019
Structure and functional prediction of a microbial community involved in a full-scale biofilter treating wastewater odor. Author(s): ALLIEVI, M. J.; CANTAO, M. E.; DELFORNO, T. P.; CRUZ, L. M. de O.; SILVEIRA, D. D.; BELLI FILHO, P. Abstract: The efficiency of biofilters depends on the microbial community, so it is crucial to understand the structural/functional dynamics and identify the key microbial genera associated with treat... ... Repository: BDPA Publication year: 2024
Plant Co-expression Annotation Resource: a web server for identifying targets for genetically modified crop breeding pipelines. Author(s): VIANA, M. J. A.; ZERLOTINI NETO, A.; MUDADU, M. de A. Abstract. The development of genetically modified crops (GM) includes the discovery of candidate genes through bioinformatics analysis using genomics data, gene expression, and others. Proteins of unk... ... Repository: BDPA Publication year: 2021
Bactérias láticas com aptidão tecnológica: recomendações para triagem e seleção pela atividade proteolítica. Author(s): SALLES, H. O.; SANTOS, K. M. O. dos; SOUSA, A. M. P.; BARCELOS, S. C. de; LIMA, A. R.; EGITO, A. S. do Resumo: Os probióticos são culturas de micro-organismos que, quando utilizadas por animais ou pelo homem, trazem benefícios à saúde promovendo melhora nas características da microflora intestinal natu... ... Repository: BDPA Publication year: 2021

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