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Role of hydrophobicity in protein evolution. Author(s): LEITE, V.; SILVA, R.; YAMAGISHI, M.; CHAHINE, J. Effect of mutations on the stability of proteins is a crucial issue in protein evolution. Such effects depend strongly on the overall hydrophobic protein character. In a recent work we suggested two s... ... Repository: BDPA Publication year: 2010
The nucleoprotein of Tomato spotted wilt virus as protein tag for easy purification and enhanced production of recombinant proteins in plants. Author(s): LACORTE, C.; RIBEIRO, S. G.; LOHUIS, D.; GOLDBACH, R.; PRINS, M. Repository: BDPA Publication year: 2007
Contacts as the key elements for comparing two protein structures. Author(s): MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JÚNIOR, W. Short Abstract: TopSiMap (Topological Similarity Map) is and interactive tool which is part of the Star Sting Suite (http://sms.cbi.cnptia.embrapa.br/SMS).As contacts pattern is very conserved in each... ... Repository: BDPA Publication year: 2006
Linearization of the Bradford protein assay to application in cow milk proteins quantification by UV-Vis spectrophotometry method. Author(s): SANTOS, A. S. de O. dos; COSTA, F. F.; ESTEVES, W. T.; BRITO, M. A. V. P. e; FURTADO, M. A. M.; MARTINS, M. F. Reliable methods for determination and quantification of total protein in food are essential information to ensure quality and safety of food trade. The objective of this study was to evaluate the lin... ... Repository: BDPA Publication year: 2014
Protein cutoff scanning: a comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins. Author(s): SILVEIRA, C. H. da; PIRES, D. E. V.; MINARDI, R.; RIBEIRO, C.; VELOSO, C. J. M.; LOPES, J. C. D.; MEIRA JÚNIOR, W.; NESHICH, G.; RAMOS, C. H. I.; HABESCH, R.; SANTORO, M. M. In this study, we carried out a comparative analysis between two classical methodologies to prospect residue contacts in proteins: the traditional cutoff dependent (CD) approach and cutoff free Delaun... ... Repository: BDPA Publication year: 2009
Using linear algebra for protein structural comparison and classification. Author(s): GOMIDE, J.; MELO-MINARDI, R.; SANTOS, M. A. dos; NESHICH, G.; MEIRA JUNIOR, W.; LOPES, J. C.; SANTORO, M. In this article, we describe a novel methodology to extract semantic characteristics from protein structures using linear algebra in order to compose structural signature vectors which may be used eff... ... Repository: BDPA Publication year: 2009
Study of specific nanoenvironments containing ?-helices in all-? and ([?]+[?])+([?]/[?]) proteins. Author(s): MAZONI, I.; BORRO, L. C.; JARDINE, J. G.; YANO, I. H.; SALIM, J. A.; NESHICH, G. Protein secondary structure elements (PSSEs) such as [alfa]-helices, [beta]-strands, and turns are the primary building blocks of the tertiary protein structure. Our primary interest here is to reveal... ... Repository: BDPA Publication year: 2018
Expression analyses of Brachiaria brizantha genes encoding ribosomal proteins BbrizRPS8, BbrizRPS15a, and BbrizRPL41 during development of ovaries and anthers. Author(s): LACERDA, A. L. M.; DUSI, D. M. de A.; ALVES, E. R.; RODRIGUES, J. C. M.; GOMES, A. C. M. M.; CARNEIRO, V. T. de C. Brachiaria brizantha is a forage grass of the Poaceae family. Introduced from Africa, it is largely used for beef cattle production in Brazil. Brachiaria reproduces sexually or asexually by apomixis,... ... Repository: BDPA Publication year: 2013
Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages. Author(s): MORAES, F. R. de; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; PEREIRA, J. G. C.; SALIM, J. A.; JARDINE, J. G.; NESHICH, G. Protein-protein interactions are involved in nearly all regulatory processes in the cell and are considered one of the most important issues in molecular biology and pharmaceutical sciences but are st... ... Repository: BDPA Publication year: 2014
The effects of ovalbumin as a protein source during the in vitro production of bovine embryos. Author(s): TETZNER, T. A. D.; SARAIVA, N. Z.; PERECIN, F.; NICIURA, S. C. M.; FERREIRA, C. R.; OLIVEIRA, C. S.; GARCIA, J. M. Embryo quality is influenced by the culture conditions that affect in vitro maturation (IVM), fertilization (IVF) and culture (IVC) rates. The present study investigated the feasibility of producing b... ... Repository: BDPA Publication year: 2011

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