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Analysing protein-protein interface using JPIV. Author(s): YAMAGISHI, M. E. B.; FALCAO, P. R. K.; BORRO, L. C.; OLIVEIRA, S. R. de M.; SANTOS, E. H. dos; JARDINE, J. G.; VIEIRA, F. D.; MAZONI, I.; NARCISO, M. G.; NESHICH, G. Short Abstract: In this work we present Java Protein Interface Viewer (JPIV). It is a web-based software designed to visualize and analyse protein-protein interfaces. It uses Delaunay triangulation in... ... Repository: BDPA Publication year: 2006
2D maps of protein surface. Author(s): NARCISO, M. G.; YAMAGISHI, M. E. B.; KUSER-FALCÃO, P. R.; NESHICH, G. Short Abstract: In this work, we present 2DIM (Two Dimensional Interface Maps). It is a graphical interface that permits to visualize the protein-protein interfaces in 2D maps. Repository: BDPA Publication year: 2006
Role of hydrophobicity in protein evolution. Author(s): LEITE, V.; SILVA, R.; YAMAGISHI, M.; CHAHINE, J. Effect of mutations on the stability of proteins is a crucial issue in protein evolution. Such effects depend strongly on the overall hydrophobic protein character. In a recent work we suggested two s... ... Repository: BDPA Publication year: 2010
The nucleoprotein of Tomato spotted wilt virus as protein tag for easy purification and enhanced production of recombinant proteins in plants. Author(s): LACORTE, C.; RIBEIRO, S. G.; LOHUIS, D.; GOLDBACH, R.; PRINS, M. Repository: BDPA Publication year: 2007
Classifiers of the protein interactions with their substrate/inhibitors. Author(s): GARCIA, V. S.; FALCÃO, P. K. Short Abstract: Basically all biological processes require protein-ligand identifications. One major challenge to biophysics-chemistry is try to predict these interactions. One step towards solving th... ... Repository: BDPA Publication year: 2006
Contacts as the key elements for comparing two protein structures. Author(s): MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JÚNIOR, W. Short Abstract: TopSiMap (Topological Similarity Map) is and interactive tool which is part of the Star Sting Suite (http://sms.cbi.cnptia.embrapa.br/SMS).As contacts pattern is very conserved in each... ... Repository: BDPA Publication year: 2006
Finding protein-protein interaction patterns by contact map matching. Author(s): MELO, R. C.; RIBEIRO, C.; MURRAY, C. S.; VELOSO, C. J. M.; SILVEIRA, C. H. da; NESHICH, G.; MEIRA JUNIOR, W.; CARCERONI, R. L.; SANTORO, M. M. We propose a novel method for defining patterns of contacts present in protein-protein complexes. A new use of the traditional contact maps (more frequently used for representation of the intra-chain... ... Repository: BDPA Publication year: 2007
Protein cutoff scanning: a comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins. Author(s): SILVEIRA, C. H. da; PIRES, D. E. V.; MINARDI, R.; RIBEIRO, C.; VELOSO, C. J. M.; LOPES, J. C. D.; MEIRA JÚNIOR, W.; NESHICH, G.; RAMOS, C. H. I.; HABESCH, R.; SANTORO, M. M. In this study, we carried out a comparative analysis between two classical methodologies to prospect residue contacts in proteins: the traditional cutoff dependent (CD) approach and cutoff free Delaun... ... Repository: BDPA Publication year: 2009
An integrated database of structural parameters for protein analysis. Author(s): OLIVEIRA, S. R. de M.; ALMEIDA, G. V.; SOUZA, K. R. R.; RODRIGUES, D. N.; NESHICH, G.; FALCAO, P. R. K.; YAMAGISHI, M. E. B.; SANTOS, E. H. dos; VIEIRA, F. D.; JARDINE, J. G. Short Abstract: STING_DB is a relational database composed of structural parameters for protein analysis operating with a collection of both publicly available data (PDB, HSSP, Prosite) and its own da... ... Repository: BDPA Publication year: 2006
Linearization of the Bradford protein assay to application in cow milk proteins quantification by UV-Vis spectrophotometry method. Author(s): SANTOS, A. S. de O. dos; COSTA, F. F.; ESTEVES, W. T.; BRITO, M. A. V. P. e; FURTADO, M. A. M.; MARTINS, M. F. Reliable methods for determination and quantification of total protein in food are essential information to ensure quality and safety of food trade. The objective of this study was to evaluate the lin... ... Repository: BDPA Publication year: 2014

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