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Detection of potential genetic variants affecting gene function in Guzerat cattle. Author(s): ZERLOTINI NETO, A.; STAFUZZA, N. B.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; SILVA, M. V. G. B. Guzerat is a dual-purpose breed recognized for important traits to its adaptation to adverse tropical environments such as resistance to parasites, heat tolerance and ability to intake forage with low... ... Repository: BDPA Publication year: 2016
Single nucleotide variants and InDels identified from whole-genome re-sequencing of Guzerat, Gyr, Girolando and Holstein cattle breeds. Author(s): STAFUZZA, N. B.; ZERLOTINI NETO, A.; LOBO, F. P.; YAMAGISHI, M. E. B.; CHUD, T. C. S.; CAETANO, A. R.; MUNARI, D. P.; GARRICK, D. J.; MACHADO, M. A.; MARTINS, M. F.; CARVALHO, M. R.; COLE, J. B.; SILVA, M. V. G. B. Whole-genome re-sequencing, alignment and annotation analyses were undertaken for 12 sires representing four important cattle breeds in Brazil: Guzerat (multi-purpose), Gyr, Girolando and Holstein (da... ... Repository: BDPA Publication year: 2017
Identification of copy number variation in Brazilian synthetic dairy cattle breed. Author(s): CHUD, T. C. S.; SILVA, M. V. G. B.; CARMO, A. S.; SILVA, T. B. R.; OLIVEIRA JUNIOR, G. A.; REY, F. S. B.; MUNARI, D. P. Repository: BDPA Publication year: 2015
Initial analysis of copy number variations in canchim beef cattle with extreme phenotypes for ribeye area. Author(s): GIACHETTO, P. F.; PEREIRA, F. C. P.; MOKRY, F. B.; HIGA, R. H.; MUDADU, M. A.; SILVA, M. V.; NICIURA, S. C. M.; CARDOSO, F. F.; ALENCAR, M. M.; MEIRELLES, S. L. C.; LIMA, A. O.; REGITANO, L. C. A. Genomic structural variation, in the form of large-scale insertions and deletions, as well as inversions and translocations, are referred to as copy number variations (CNVs). Compared to single nucleo... ... Repository: BDPA Publication year: 2013
Rice and bean SNP information system. Author(s): NARCISO, M. G.; BORBA, T. Single base polymorphisms or SNPs ("Single nucleotide polymorphisms") are the most common forms of genetic variation in eukaryotic genomes. Being stable and easily analyzed by automated methodologies,... ... Repository: BDPA Publication year: 2011
Estrutura e diversidade genética de uma população de Coffea canephora conilon utilizando marcadores SNPs identificados por nextRAD. Author(s): CARNEIRO, F. de A.; RÊGO, É. C. S.; AQUINO, S. O. de; COSTA, T. S.; LIMA, E. A. de; ROCHA, O. C.; RODRIGUES, G. C.; CARVALHO, M. A. de F.; MARRACCINI, P.; BARTHOLO, G. F.; GUERRA, A. F.; SILVA JUNIOR, O. B. da; GRATTAPAGLIA, D.; ANDRADE, A. C. Este trabalho objetivou (i) avaliar e caracterizar, por meio da técnica de genotipagem nextRAD (Nextera-tagmented reductively-amplified DNA), a diversidade e a estrutura genética de indivíduos de C. c... ... Repository: BDPA Publication year: 2015
Ajuste de ondas genômicas no sinal de intensidade de dados de genotipagem para a identificação de CNVs. Author(s): PEREIRA, F. C. P.; GONÇALVES, A. R.; REGITANO, L. C. A.; GIACHETTO, P. F. O presente trabalho teve como objetivo avaliar uma metodologia de ajuste da intensidade do sinal para ondas genômicas, na identificação de CNVs em bovinos da raça Canchim, genotipados com um chip de S... ... Repository: BDPA Publication year: 2013
Acurácia de imputação de genótipos para estudos de associação genômica em bovinos da raça Canchim. Author(s): SANTIAGO, G. G.; SIQUEIRA, F.; BOISON, S. A.; CARDOSO, F. F.; REGITANO, L. C. de A.; TORRES JUNIOR, R. A. de A. Repository: BDPA Publication year: 2014
Genome-wide copy number variation (CNV) detection in Nelore cattle reveals highly frequent variants in genome regions harboring QTLs affecting production traits. Author(s): SILVA, J. M. da; GIACHETTO, P. F.; SILVA, L. O. da; CINTRA, L. C.; PAIVA, S. R.; YAMAGISHI, M. E. B.; CAETANO, A. R. Background: Copy number variations (CNVs) have been shown to account for substantial portions of observed genomic variation and have been associated with qualitative and quantitative traits and the on... ... Repository: BDPA Publication year: 2016
A gene-transcription factor network associated with residual feed intake based on SNVs/InDels identified in Gir, Girolando and Holstein cattle breeds. Author(s): VERARDO, L. L.; STAFUZZA, N. B.; MUNARI, D. P.; ZERLOTINI NETO, A.; CHUD, T. C. S.; GARRICK, D. J.; COLE, J. B.; PANETTO, J. C. do C.; MACHADO, M. A.; MARTINS, M. F.; SILVA, M. V. G. B. The aim of this study was to analyze whole-genome re-sequencing data focusing on SNVs and InDels identified in Gir, Girolando and Holstein cattle breeds related to RFI. Thus, genes showing SNVs/InDels... ... Repository: BDPA Publication year: 2018

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