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Storage as a service and utility computing for bioinformatics computing environment: aspects of cloud computing applied to scientific computing. Author(s): ARBEX, W. A.; SILVA, M. V. G. B.; MARTINS, M. F.; TAGLIATTI, R. F.; ANDRADE, L. G. DE; GUEDES, E.; MUNIZ, M. N. M.; CARVALHO, L. A. V DE Repository: BDPA Publication year: 2011
Storage as a service and cloud computing for bioinformatics computing environment. Author(s): ARBEX, W. A.; TAGLIATTI, R. F.; ANDRADE, L. G. D.; MUNIZ, M. N. M.; GUEDES, E.; SILVA, M. V. G. B. Repository: BDPA Publication year: 2010
Embrapa Bioinformatics Multi-Users Laboratory - LMB. Author(s): KUSER-FALCÃO, P. R.; YAMAGISHI, M. E. B.; GIACHETTO, P. F.; SILVA, F. R.; LOBO, F. P.; CINTRA, L. C.; ZERLOTINI, A.; HIGA, R.; VIEIRA, F. The Bioinformatics Multi-Users Laboratory of Embrapa provides an array of shared research resources and infra-structure to the Embrapa community and research collaborators The primary mission of the L... ... Repository: BDPA Publication year: 2012
Java Merging Copy Number Variants (JM-CNV): a new algorithm for identifying Copy Number Variant Regions (CNVR). Author(s): SILVA, J. M. da; ROMANIUC, A. R.; CAETANO, A. R.; GIACHETTO, P. F.; YAMAGISHI, M. E. B. CNVs (Copy Number Variations) are defined as copy number variations of DNA fragments typically larger than one kilobase (Kb), but less than five megabases (Mb). They represent a genomic disequilibrium... ... Repository: BDPA Publication year: 2015
POTION: a massive parallel program for identification of homologous genes under positive selection on genomic scale datasets. Author(s): HONGO, J.; CASTRO, G.; SILVA, F.; CINTRA, L.; ZERLOTINI, A.; LOBO, F. The search for positive selection is also highly parallelizable, since each group of homologous can be analyzed independently. Here we describe POTION (POsitive selecTION), a massively parallel softwa... ... Repository: BDPA Publication year: 2012
On the robustness of SNPs filtering using computational intelligence. Author(s): ZONOVELLI, B.; BORGES, C. C. H.; ARBEX, W. A. Repository: BDPA Publication year: 2015
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genes. Author(s): HONGO, J. A.; CASTRO, G. de; CINTRA, L.; ZERLOTINI, A.; LOBO, F. We present POTION, an open source, modular and end-to-end software for genome-scale detection of positive Darwinian selection in groups of homologous coding sequences. Our software represents a key st... ... Repository: BDPA Publication year: 2015
A Low-cost Infrastructure for Massive Storage of Phenotype Data for Dairy Cattle Genetic Improvement Program. Author(s): ARBEX, W. A.; CARVALHO, C. dos S. B. de; SANTOS, K. C. L. dos; BRUM, V. C; SILVA, M. V. G. B. Repository: BDPA Publication year: 2014
A genetic programming model for association studies to detect epistasis in low heritability data. Author(s): RIBEIRO, I. M.; BORGES, C. C. H.; SILVA, B. Z.; ARBEX, W. A. Abstract The genome-wide associations studies (GWAS) aims to identify the most influential markers in relation to the phenotype values. One of the substantial challenges is to find a non-linear mappin... ... Repository: BDPA Publication year: 2018
NeuroSNP: Tool to Filter SNPs in Whole Genomic DNA. Author(s): ZONOVELLI, B.; BORGES, C. C. H.; ARBEX, W. A. Repository: BDPA Publication year: 2014

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