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Using linear algebra for protein structural comparison and classification. Author(s): GOMIDE, J.; MELO-MINARDI, R.; SANTOS, M. A. dos; NESHICH, G.; MEIRA JUNIOR, W.; LOPES, J. C.; SANTORO, M. In this article, we describe a novel methodology to extract semantic characteristics from protein structures using linear algebra in order to compose structural signature vectors which may be used eff... ... Repository: BDPA Publication year: 2009
Predicting enzyme class from protein structure using Bayesian classification. Author(s): BORRO, L. C.; OLIVEIRA, S. R. M.; YAMAGISHI, M. E. B.; MANCINI, A. L.; JARDINE, J. G.; MAZONI, I.; SANTOS, E. H. dos; HIGA, R. H.; KUSER, P. R.; NESHICH, G. ABSTRACT. Predicting enzyme class from protein structure parameters is a challenging problem in protein analysis. We developed a method to predict enzyme class that combines the strengths of statistic... ... Repository: BDPA Publication year: 2006
Protein structure topology comparison based on contact maps. Author(s): MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JUNIOR, W. Short Abstract: Topologs (Topology Homologous) is a tool which is part of the Star Sting Suite (http://sms.cbi.cnptia.embrapa.br/SMS). It is a structural classification of proteins totally based on th... ... Repository: BDPA Publication year: 2006
Improving predictions of protein-protein interfaces by combining amino acid-specific classifiers based on structural and physicochemical descriptors with their weighted neighbor averages. Author(s): MORAES, F. R. de; NESHICH, I. A. P.; MAZONI, I.; YANO, I. H.; PEREIRA, J. G. C.; SALIM, J. A.; JARDINE, J. G.; NESHICH, G. Protein-protein interactions are involved in nearly all regulatory processes in the cell and are considered one of the most important issues in molecular biology and pharmaceutical sciences but are st... ... Repository: BDPA Publication year: 2014
Expression analyses of Brachiaria brizantha genes encoding ribosomal proteins BbrizRPS8, BbrizRPS15a, and BbrizRPL41 during development of ovaries and anthers. Author(s): LACERDA, A. L. M.; DUSI, D. M. de A.; ALVES, E. R.; RODRIGUES, J. C. M.; GOMES, A. C. M. M.; CARNEIRO, V. T. de C. Brachiaria brizantha is a forage grass of the Poaceae family. Introduced from Africa, it is largely used for beef cattle production in Brazil. Brachiaria reproduces sexually or asexually by apomixis,... ... Repository: BDPA Publication year: 2013
Contacts as the key elements for comparing two protein structures. Author(s): MELO, R. C.; MAZONI, I.; NESHICH, G.; SANTORO, M. M.; MEIRA JÚNIOR, W. Short Abstract: TopSiMap (Topological Similarity Map) is and interactive tool which is part of the Star Sting Suite (http://sms.cbi.cnptia.embrapa.br/SMS).As contacts pattern is very conserved in each... ... Repository: BDPA Publication year: 2006
Effect of UV-C light irradiation on the structure and microbiological quality of whey from bovine milk. Author(s): CORDEIRO, C. S.; CARDOSO, D. R.; CAVALLINI, D. C. U.; NASSU, R. T. Whey from bovine milk has mainly B-lactoglobulin (B-L) and α-lactoalbumin (α-L) proteins in its composition, being a food with elevated nutritional value. Repository: BDPA Publication year: 2022
Effect of soybean proteins ont the enzymatic hydrolysis of different pretreated sugarcane bagasse. Author(s): FLORENCIO, C.; BRONDI, M. G.; FARINAS, C. S. Repository: BDPA Publication year: 2017
In vitro degradation and gas production of brachiaria grass with levels of biodiesel byproducts. Author(s): FREIRE, J. M.; SILVA, A. M. de A.; CARNEIRO, H.; PEREIRA FILHO, J. M.; ROCHA, L. B.; BIDLER, D. C. ABSTRACT This study aimed to evaluate the in vitro degradability and gas production in diets containing byproducts from the national biodiesel industry (castor bean, canola, forage radish and black su... ... Repository: BDPA Publication year: 2017
Zinc fractionation in cow, goat, sheep and soybean milk samples using gel-electrophoresis and determination by electrothermal atomic absorption spectrometry (ETAAS). Author(s): BOSSU, C. M.; GIGLIOTI, R.; OLIVEIRA, M. C. de S.; OLIVEIRA, P. V. DE; NOGUEIRA, A. R. de A. A screening method for zinc levels in different milk samples (raw cow, raw sheep, UHT cow, UHT goat and soybean milk base) was performed to establish the Zn levels' differences in protein samples. The... ... Repository: BDPA Publication year: 2021

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